Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYADRDLPGAGGLAVRVIPCLDVDDGRVVKGVNFENLRDAGDPVELAAVYDAEGADELTFLDVTASSSGRATMLEVVRRTAEQVFIPLTVGGGVRTVADVDSLLRAGADKVAVNTAAIACPDLLADMARQFGSQCIVLSVDARTVPVGSAPTPSGWEVTTHGGRRGTGMDAVQWAARGADLGVGEILLNSMDADGTKAGFDLALLRAVRAAVTVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFRELTIGQVKAALAAEGITVR
2RKX Chain:A ((2-249))
------------LAKRIIAALIVKDGRVVKGSNFENLRDSGDPVELGKFYSEIGIDELSFWDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVEINTAAVENPSLITQIAQTFGSQAVVVYIAAKRV-------DGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRPLTTLPIIAHGGAGKMEHFLEAFLAGADAAKANSVFHFREIDVRELKEYLKKHGVNVR
General information:
TITO was launched using:
RESULT:
Template:
2RKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182684 for 2167 contacts (-84.3/contact) +
2D Compatibility (PS) -27386 + (NN) -14073 + (LL) -36
1D Compatibility (HY) -21600 + (ID) 6150
Total energy: -251929.0 ( -116.26 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_2RKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKX-query.scw
PDB file :
Tito_Scwrl_2RKX.pdb
: