Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADVPLDAQERLELCDLLEELGP---AVATLIEGWTAHDLAAHIVLRERDLVAGLCIVLPGPFQRFAERRRARLAQSKDFTWLVARIRSGPPMGFFRIGWVRTLANLNEFFVHHEDVRRASGRGPRSLTPEMDAALWRNVRRGSHFLSRRLHGCGLEIEWVGTGKRVRVRSGEPTARLTGPPGELLLYVFGRRAVARVEVSGPLEAIAAVHRTHFGM |
2YQY Chain:A ((14-90)) | ---LKRLEASRKALLALLREADPAWLSAPLREGAWTPLMVAEHVALVED------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YQY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7709 for 181 contacts (-42.6/contact) +
2D Compatibility (PS) -4783 + (NN) -3080 + (LL) 11472
1D Compatibility (HY) -800 + (ID) 600
Total energy: -5500.0 ( -30.39 by residue)
QMean score : 0.352
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