Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNLRRAVFAGLVAGTLSEGAAATAGDGGFVEDSELQFLARTYYFNRDYRDS--PNNAGRNRFKPRSERNGYREEATQGLRLQFASGYTPGSLGFGLDAHAMLGLQLDSGGGRTGTGNLPVGADGHPDHRYGKVGGALRLRHGETRLKYGQTTTSAPVFAASSNRTLAGMAYGLLLEDRSFDGLLLEGGRFTAASGPGESKVRGDISTVYGRLGAYPV--RLDAVGFLGGQWQATERLQLSLYASRFDDIWQQAYFGASHRQPLGGERALRVDLDAYRTRDSGQSRFGRIDTLTSSLALGYEHGPQRITLAYQRVHGEQPFDYMAFGDGRSSASMVLANSVGYSDFNGPGERSWQLRYDLDLGALGLPGLSLHALHARGRAGASASSAAESIYAGLYGRDGRHRENDLGFAYRVKAGPLAGLALRASQAWHRGNASYLDGDIDETRLVVDYSRSIW |
| 2Y0K Chain:A ((8-390)) | -----------------------------LVEDSHASLELRNFYFNRDFR--GARDNA---------------DEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLD-------------------QDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHL--------DRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLG--RSLKSDLRFARASEDGG--FRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSD------PYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAA-----------NDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFA---NDLDENRLILSYSLALW |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28798 for 2781 contacts (-10.4/contact) +
2D Compatibility (PS) -35870 + (NN) -6606 + (LL) 1624
1D Compatibility (HY) -23200 + (ID) 6550
Total energy: -99400.0 ( -35.74 by residue)
QMean score : 0.286
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