Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASAKLSRMVCLLCGFFSTGISMASSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRATP
3GYX Chain:I ((396-433))
--------------------------------------------------CAPEERGSEIMPTEPYLLGSHSGCCGIWASGPDEAWVPEDYKVRAANGKVYNRMTTVEGLWTCADGVGASGHKFSSGSHAE
General information:
TITO was launched using:
RESULT:
Template:
3GYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1984 for 114 contacts (-17.4/contact) +
2D Compatibility (PS) -3798 + (NN) -349 + (LL) 4048
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -4733.0 ( -41.52 by residue)
QMean score : 0.005
(partial model without unconserved sides chains):
PDB file :
Tito_3GYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYX-query.scw
PDB file :
Tito_Scwrl_3GYX.pdb
: