Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTSLMLEEALSAATVASRQLAVLDACLPALGQRLREVDPNLALTVARGSSDHAASYFAYLAMQHAGLPVASLPMSVVTLNRSPLRVAGQAVFAFSQSGQSPDLVDSLRILRERGALG-IALVNAEDSPLEAASEFVVPLCAGAERSVAATKSFIATLSASARLLAHWQR--------DNALLAAGQGLAAGLEQAARLDWSPAIEVL----RDCQRLMVIGRGAGYAIAQEAALKFKETSAIQAEAFSSAEVRHGPMALVEERYPLLVFAPRGPEQEGLLALAEDMRQRGAQVLLAAPDD---IAERDLPLQRAAH--PALDPILAIQSFYVMAAGLAEARGMDPDQPRHLSKVTRTH |
4AMV Chain:A ((299-604)) | --------------------------------------------LACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVR-RNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHDIVHGLQALPSRIEQM--LSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179506 for 2434 contacts (-73.7/contact) +
2D Compatibility (PS) -31415 + (NN) -19243 + (LL) 5076
1D Compatibility (HY) -19600 + (ID) 4750
Total energy: -249438.0 ( -102.48 by residue)
QMean score : 0.580
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