Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNLILTAMLAMASLFGMAAQADDYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESM--------GVEHDVHNA-VFEAIHKEHKKLATPEEMADFLAGK-GVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLK-LADYLIEKERAAAKK
3DVW Chain:A ((29-213))
---------------------------GQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM-YLRTEHV---VWQ---KEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAA---
General information:
TITO was launched using:
RESULT:
Template:
3DVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103215 for 1273 contacts (-81.1/contact) +
2D Compatibility (PS) -19343 + (NN) -9788 + (LL) 3032
1D Compatibility (HY) -12800 + (ID) 2850
Total energy: -144964.0 ( -113.88 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3DVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DVW-query.scw
PDB file :
Tito_Scwrl_3DVW.pdb
: