Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
3KFJ Chain:A ((4-103))
-------------------------------------------------------KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVP--------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57490 for 680 contacts (-84.5/contact) +
2D Compatibility (PS) -10844 + (NN) -7575 + (LL) 5948
1D Compatibility (HY) -13600 + (ID) 5000
Total energy: -88561.0 ( -130.24 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_3KFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KFJ-query.scw
PDB file :
Tito_Scwrl_3KFJ.pdb
: