Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
1MYI Chain:A ((1-153))
-GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDSFKHLKSEDEMKASEDLKKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
1MYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59117 for 1112 contacts (-53.2/contact) +
2D Compatibility (PS) -16373 + (NN) -9938 + (LL) 208
1D Compatibility (HY) -18000 + (ID) 7100
Total energy: -110320.0 ( -99.21 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1MYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MYI-query.scw
PDB file :
Tito_Scwrl_1MYI.pdb
: