Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKL-GCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ
1YXL Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWQDFADYGCYCGKGGSGTPVDDLDRCCQVHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1YXL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84643 for 886 contacts (-95.5/contact) +
2D Compatibility (PS) -12722 + (NN) -6730 + (LL) 120
1D Compatibility (HY) -14400 + (ID) 4350
Total energy: -122725.0 ( -138.52 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1YXL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXL-query.scw
PDB file :
Tito_Scwrl_1YXL.pdb
: