Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1ZM6 Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDDNYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1ZM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69075 for 873 contacts (-79.1/contact) +
2D Compatibility (PS) -12941 + (NN) -8255 + (LL) 120
1D Compatibility (HY) -15200 + (ID) 5500
Total energy: -110851.0 ( -126.98 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1ZM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZM6-query.scw
PDB file :
Tito_Scwrl_1ZM6.pdb
: