Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPLPVCLPIMLLLLLPSLLLLLLLPGPGSGEASRILRVHRRGILELAGTVGCVGPRTPIAYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLCKCDQEIANCLA--QTEYNLKYLFYPQFLCEPDSPKCD
1DB5 Chain:A ((13-124))
-----------------------------------------------------TGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK-QDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC-
General information:
TITO was launched using:
RESULT:
Template:
1DB5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41597 for 733 contacts (-56.7/contact) +
2D Compatibility (PS) -11546 + (NN) -6915 + (LL) 3640
1D Compatibility (HY) -5600 + (ID) 2250
Total energy: -64268.0 ( -87.68 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_1DB5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DB5-query.scw
PDB file :
Tito_Scwrl_1DB5.pdb
: