Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2P2L Chain:A ((5-183))
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV---GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP------------
General information:
TITO was launched using:
RESULT:
Template:
2P2L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133181 for 1425 contacts (-93.5/contact) +
2D Compatibility (PS) -18750 + (NN) -8132 + (LL) 964
1D Compatibility (HY) -23200 + (ID) 6350
Total energy: -188649.0 ( -132.39 by residue)
QMean score : 0.734
(partial model without unconserved sides chains):
PDB file :
Tito_2P2L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P2L-query.scw
PDB file :
Tito_Scwrl_2P2L.pdb
: