Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
1K8R Chain:A ((1-166))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1K8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103006 for 1356 contacts (-76.0/contact) +
2D Compatibility (PS) -18077 + (NN) -5130 + (LL) 488
1D Compatibility (HY) -23200 + (ID) 8300
Total energy: -157225.0 ( -115.95 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_1K8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K8R-query.scw
PDB file :
Tito_Scwrl_1K8R.pdb
: