Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
1CLU Chain:A ((1-166))
MTEYKLVVVGAPGVGKSALTIQLIQNHFVDE------DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1CLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103948 for 1300 contacts (-80.0/contact) +
2D Compatibility (PS) -17855 + (NN) -8066 + (LL) 2208
1D Compatibility (HY) -22000 + (ID) 7350
Total energy: -157011.0 ( -120.78 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1CLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CLU-query.scw
PDB file :
Tito_Scwrl_1CLU.pdb
: