Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
3DJV Chain:A ((1-124))
--------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
3DJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25716 for 799 contacts (-32.2/contact) +
2D Compatibility (PS) -13919 + (NN) -12047 + (LL) 3040
1D Compatibility (HY) -14800 + (ID) 6200
Total energy: -69642.0 ( -87.16 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3DJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJV-query.scw
PDB file :
Tito_Scwrl_3DJV.pdb
: