Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDHQDPYSVQATAAIAAAITFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELL-GYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSR---ALEYNSKRTPRRIKCIILTVWLIAAVISLPPLIYKGDQGPQPRGRPQCKLNQEAW--YILASSIGSFFAPCLIMILVY-LRIYLIAKRSNRRGPRAKGGPGQGESKQPRPDHGGALASAKLPALASVASAREVNGHSKSTGEKEEGETPEDTGTRALPPSWAALPNSGQGQKEGVCGASPEDEAEEEEEEEEECEPQAVPVSPASACSPPLQQPQGSRVLATLRGQVLLGRGVGAIGGQWWRRRAQLTREKRFTFVLAVVIGVFVLCWFPFFFSYSLGAICPK-HCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAF-RRILCRPWTQTAW |
4IB4 Chain:A ((33-414)) | ---------------ALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATA-FIK--ITVVWLISIGIAIPVPIKGIET---NPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAADLEDNWETLNDNLKVIE-KADNAAQVKDALTKMRAAALDAQ------K----------------KDFRHGFDILV----GQIDDALKLANEGKVKE-----------------AQAAAEQLKTTRNAYIQKYLQ---------------------TISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IB4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189968 for 2605 contacts (-72.9/contact) +
2D Compatibility (PS) -35217 + (NN) 7195 + (LL) 3580
1D Compatibility (HY) -36800 + (ID) 6150
Total energy: -257360.0 ( -98.79 by residue)
QMean score : 0.193
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