Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MCFSPILEINMQSESNITVRDDIDDINTNMYQPLSYPLSFQVSLTGFLMLEIVLGLGSNLTVLVLYCMKSNLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTALICCFHEACVSFASVSTAINVF---AITLDRYDISVKP--ANRILTMGRAVMLMISIWIFSFFSFLIPFIEVNFFSLQSGNTWENKT---------LLCVSTNEYYTELGMYYHLLVQIPIFFFTVVVMLITYTKILQALNIRIGTRFSTGQKKKARKKKTISLTTQHEATDMSQSSGGRNVVFGVRTSVSVIIALRRAVKRHRERRERQKRVFRMSLLIISTFLLCWTPISVLNT-TILCLGPSDLLVKLRLCFLVMAYGTTIFHPLLYAFT----RQKFQKVLKSKMKKRVVSIVEADPLPNNAVIHNSWIDPKRNKKITFEDSEIREKCLVPQVVTD |
2YDO Chain:A ((18-310)) | ----------------------------------------------------VLAILGNVLVCWAVWLNSNLQN-VTNYFVVSAAAADILVGVLAIPFAIAI---STGFCAACHGCLFIAC--FVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWN----NCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFN-------FFACVLVPLL--------LMLGVYLRIFLAARRQLKQMES----------TLQKE---------VHAAKSLAI-------------------------IVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYF---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226189 for 1991 contacts (-113.6/contact) +
2D Compatibility (PS) -26731 + (NN) -4645 + (LL) 12292
1D Compatibility (HY) -26000 + (ID) 3850
Total energy: -275123.0 ( -138.18 by residue)
QMean score : 0.168
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