Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MACNSTSLEAYTYLLLNTSNASDSGSTQLPAPLRISLAIVMLLMTVVGFLGNTVVCIIVYQRPAMRSAINLLLATLAFSDIMLSLCCMPFTAVTLITVRWHFGDHFCRLSATLYWFFVLEGVAILLIISVDRFLIIV---QRQDKLNPRRAKVIIAVSWVLSFCIAG-PSLTGWTLVEVPARAPQCVL--GYTELPADRAYVVTLVVAVFFAPFGVMLCAYMCILNTVRKNAVRVHNQSDSLDLRQLTRAGLRRLQRQQQVSVDLSFKTKAFTTILILFVGFSLCWLPHSVYSLLSVFSQRFYCGSSFYATSTCVLWLSYLKSVFNPIVYCWRIKKFREACIELLPQTFQILPKVPERIRRRIQPSTVYVCNENQSAV |
| 2YCW Chain:A ((7-299)) | -------------------------SQQWEAGMSLLMALVVLLIVA----GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP-QALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFV-----------ALRVYREAKE-QIRKIDRASKRK-------RVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFN----WLGYANSAMNPIIYC-RSPDFRKA--------FKRLLAF----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273388 for 2163 contacts (-126.4/contact) +
2D Compatibility (PS) -28640 + (NN) -297 + (LL) 6856
1D Compatibility (HY) -31600 + (ID) 4550
Total energy: -331619.0 ( -153.31 by residue)
QMean score : 0.239
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