Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERAPPDGPLNASGALAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSSLRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCTSSAFNIVLISYDRFLSVTRAVSYRAQQGDTRRAVRKMLLVWVLAFLL-YGPAILSWEYLSGGSSIPEGHCYAE-----FFYNWYFLITASTLEFFTPFLSVTFFNLSIY------LNIQRRTR----LRLDGAREAAG---------PEPPPEAQPSPPPPPGCWGCWQKG---HGEAMPLHRYGVGEAAVGA-----------------EAGEATLGGGGGGGSVASPTSSSG--SSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQSFT---QRFRLSRDRKVAKSLAVIVSIFGLCWAPYTLLMIIRAACHGHCVPDYWYETSFWLLWANSAVNPVLYPLCHH-SFRRAFTKLLCPQKLKIQPHSSLEHCWK |
| 3NY9 Chain:A ((40-478)) | --------------------------------WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARV-IILMVWIVSGLTSFLPIQMHWYRATHQEAI---NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAK-SRWYNQTPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVH-VIQDNLIRKEVYILLNWIGYVNSGFNPLIY--CRSPDFRIAFQELLCL---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NY9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193881 for 2726 contacts (-71.1/contact) +
2D Compatibility (PS) -39655 + (NN) -6748 + (LL) 2088
1D Compatibility (HY) -34800 + (ID) 5600
Total energy: -278596.0 ( -102.20 by residue)
QMean score : 0.204
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