Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLANSSSTNSSVLPCPDYRPTHRLHLVVYSLVLAAGLPLNALALWVFLRALRVHSVVSVYMCNLAASDLLFTLSLPVRLSYYALHHWPFPDLLCQTTGAIFQMNMYGSCIFLMLINVDRYAAIVHPLRLRHLRRPRVARLLCLGVWALILVFAVPAARVHRPSRCRYRDLEVRLCFESFSDELWKGRLLPLVLLAEALGFLLP--LAAVVYS------SGRVFWTLARPDATQSQRRRKTVRLLLANLVIFLLCFVPYNSTLAVYGLLRSKLVAASVPARDRVRGVLMVMVLLAGANCVLDPLVYYFSAEGFRNTLRGLGTPHRARTSATNGTRAALAQSERSAVTTDATRPDAASQGLLRPSDSHSLSSFTQCPQDSAL |
| 4EA3 Chain:A ((131-405)) | ---------------------------LYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP-------TSSKAQAVNVAIWALASVVGVPVAIM---GSAQVEDEEIECLVEIPTPQDYWGPVFAICIF--LFSFIVPVLVISVCYSLMIRRLRGVRLLSGSR---EKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGL-------GVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFR--------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EA3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243417 for 1947 contacts (-125.0/contact) +
2D Compatibility (PS) -26704 + (NN) -11045 + (LL) 5712
1D Compatibility (HY) -22800 + (ID) 3900
Total energy: -302154.0 ( -155.19 by residue)
QMean score : 0.248
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