Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDNASFSEPWPANASGPDPALSCSNASTLAPLPAPLAVAVPVVYAVICAVGLAGNSAVLYVLLRAPRMKTVTNLFILNLAIADELFTLVLPINIADFLLRQWPFGELMCKLIVAIDQYNTFSSLYFLTVMSADRYLVVLATAESRRVAGRTYSAARAVSLAVWGIVTLVVLPFAVFAR-LDDEQGRRQCVLVFPQPEAFWWRASRLYTLVLGFAIPVSTICVLYTTLLCRLHAMRLDSHAKALERAKKRVTFLVVAILAVCLLCWTPYHLSTVVALTTDLPQTPLV---------IAISYFITS-LSYANSCLNPFLYAFLDASFRRNLRQLITCRAAA |
2LNL Chain:A ((42-320)) | ---------------------------------------VIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAAS-KVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRY---LAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVP------LFVMLFC--YGFTLRTLFKAHMGQKHRAMRVIFAVVLIFLLCWLPYNL---VLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185046 for 1927 contacts (-96.0/contact) +
2D Compatibility (PS) -26419 + (NN) -1716 + (LL) 3148
1D Compatibility (HY) -33600 + (ID) 4450
Total energy: -248083.0 ( -128.74 by residue)
QMean score : 0.245
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