Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METSSPRPPRPSSNPGLSLDARLGVDTRLWAKVLFTALYALIWALGAAGNALSAHVVLKARAGRAGRLRHHVLSLALAGLLLLLVGVPVELYSFVWFHYPWVFGDLGCRGYYFVHELCAYATVLSVAGLSAERCLAVCQPLRARSLLTPRRTRWLVALSWAASLGLALPMAVIMGQKHELETADGEPEPASRVCTVLVSRTA--LQVFIQVNVLV-SFVLPLALTAFLNGVTVSHLLALCSQVPSTSTPGSSTPSRLELLSEEGLLSFIVWKKTFIQGGQVSLVRHKDVRRIRSLQRSVQVLRAIVVMYVICWLPYHARRLMYCYVPDDAWTDPLYNFYHYFYMVTNTLFYVSSAVTPLLYNAVSSSFRKLFLEAVSSLCGEHHPMKRLPPKPQSPTLMDTASGFGDPPETRT |
| 5C1M Chain:A ((22-296)) | ------------------------------------ALYSIVCVVGLFGNFLVMYVIVRYTKMKTAT-NIYIFNLALADAL---ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSID---------CTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRL------------------KSVRMLSGS---------------------KEKD----RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALI-----TIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208974 for 2009 contacts (-104.0/contact) +
2D Compatibility (PS) -27927 + (NN) -10143 + (LL) 5980
1D Compatibility (HY) -29200 + (ID) 3250
Total energy: -273514.0 ( -136.14 by residue)
QMean score : 0.330
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