Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIQPMASPSNSSTVPVSEFLLICFPNFQSWQHWLSLPLSLLFLLAMGANTTLLITIQLEASLHQPLYYLLSLLSLLDIVLCLTVIPKVLAIFWYDLRSISFPACFL-QMFIMNSFLPMESC--TFMVMAYDRYVAICHPLRYPSIITNQFVAKASVFIVVRNALLTAPIPILTSLLHYCGENVIENCICANLSVSRLSCDNFTLNRIYQFVAG-WTLLGSDLFLIFLSYTFILRAVLRFKAEGAAV---------KALSTCGSHFILILFFSTILLVVVLTNVA----RKKVPMDILILLNVLHHLIPPALNPIVYGVRTKEIKQGIQKLLQRGR |
2Y04 Chain:A ((8-299)) | ---------------------------QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV---VRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTR---ARAKVIICTVWA-ISALVSFLPIMMHWWRDEDPQALKCYQDP----GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQ--------SRVMLMREHKALKTLG---IIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGY-ANSAMNPIIY-CRSPDFRKAFKRLLA--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -229117 for 1912 contacts (-119.8/contact) +
2D Compatibility (PS) -26821 + (NN) -10004 + (LL) 3756
1D Compatibility (HY) -30400 + (ID) 3700
Total energy: -296286.0 ( -154.96 by residue)
QMean score : 0.274
|
|
|