Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTDNQTWVSEFILLGLSSDWDTRVSLFVLFLVMYVVTVLGNCLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATSVVPQLLAHFLAEHKAIPFQSCAAQLFFSLAL----GGIEFVLLAVMAYDRYVAVCDALRYSAIMHGGLCARLAITSWVSGFISSPVQTAITFQLPMCRNKFIDHISCELLAVVRLACVDTSSNEVTIMVSSIVLLMTPFCLV----LLSYIQIISTILKIQSREGRK---------KAFHTCASHLTVVALCYGVAIFTYIQPHSSPSVLQEKLFSVF----YAILTPMLNPMIYSLRNKEVKGAWQKLLWKFSGLTSKLAT |
2Y04 Chain:A ((6-299)) | ----------------LSQQWEAGMSLLMALVVLLIVA--GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP--FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIE--TLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWA-------ISALVSF-LPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQ-----------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYA--NSAMNPIIYC-RSPDFRKAFKRLLA----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209031 for 1835 contacts (-113.9/contact) +
2D Compatibility (PS) -26514 + (NN) -8605 + (LL) 4320
1D Compatibility (HY) -26800 + (ID) 3700
Total energy: -270330.0 ( -147.32 by residue)
QMean score : 0.221
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