Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNQSFVTEFVLLGLSQNPNVQEIVFVVFLFVYIATVG--GNMLIVVTILSSPAL-LVSPMYFFLGFLSFLDACFSSVITPKMIVDSLYVTKTISF--EGCMMQLFAEHFFAGVEVIVLTAMAYDRYVAICKPLHYSSIMNRRLCGILMGVAWTGGLLHSMIQILFTFQLP------------FCGPNV----------INHFMCDLYPLLELACTDTHIFGLMVVINSGFICIIN-FSLLLVSYAVILLSLRTHSSEGRWK-----------ALSTCGSHIAVVILFFVPCIFVYTRPPSAFSLDKMAAIFYIILNPLLNPLIYTFRNKEVKQAMRRIWNRLMVVSDEKENIKL |
| 4GRV Chain:A ((23-322)) | --------------LDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARK---SLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLA-IPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNT-------VIANKLTVMVNIFEMLRIDEGLRLKIYK--DTEGYYTIGIGHLLTKSPSLNAAKSELDK---RNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GRV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173698 for 1543 contacts (-112.6/contact) +
2D Compatibility (PS) -25209 + (NN) 1964 + (LL) 3164
1D Compatibility (HY) -18000 + (ID) 3200
Total energy: -214979.0 ( -139.33 by residue)
QMean score : 0.049
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