Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPQNTTQVSMFVLLGFSQTQELQKFLFLLFLLVYVTTIVGNLLIMVTVTFDCRLHTPMYFLLRNLALIDLCYSTVTSPKMLVDFLHETKTISYQGCMAQIFFFHLLGGGTVFFLSVMAYDRYIAISQPLRYVTIMNTQLCVGLVVAAWVGGFVHSIVQLALILPLPFCGPNILDNFYCDVPQVLRLAC--TDTSLLEFLMISNSGLLVIIWFLLLLISYTVILVMLRSHSGKAR--RKAASTCTTHI-IVVSMIFIPCIYIYTW-P---------FTP-------FLMDKAVSISYTVMTPMLNPMIYTLRNQDMKAAMRRLGKCLVICRE |
| 2YDV Chain:A ((14-302)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFA---IGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ----STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT--NSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -256759 for 2001 contacts (-128.3/contact) +
2D Compatibility (PS) -26070 + (NN) -7971 + (LL) 4224
1D Compatibility (HY) -21200 + (ID) 3300
Total energy: -311076.0 ( -155.46 by residue)
QMean score : 0.332
|
|
|