Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENKTEVTQFILLGLTNDSELQVPLFITFPFIYIITLVGNLGIIVLIFWDSCLHNPMYFFLSNLSLVDFCYSSAVTPIVMA---GFLIEDKVISYNACAAQMYI--FVAFATVEN-YLLASMAYDRYAAVCKPLHYTTTMTTTVCARLAIGSYLCGFLNASIHTGDTFSLSFC---KSNEVHHFFCDIPAVMVLSCSDRHISELV-LIYVVSFNIF----IALLVILISYTFIFITILKM-HSASVYQKPLSTCASHFIAVGIFYGTII-------FMYLQPSSSHSMDTDKMAPVFYTMVIPMLNPLVYSLRNKEVKSAFKKVVEKAKLSVGWSV |
4UG2 Chain:A ((16-304)) | -------------------------------IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFC--------AACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR-AKGIIA--ICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACL------FEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQL-ARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235283 for 1876 contacts (-125.4/contact) +
2D Compatibility (PS) -25541 + (NN) -1853 + (LL) 3924
1D Compatibility (HY) -24400 + (ID) 3550
Total energy: -286703.0 ( -152.83 by residue)
QMean score : 0.258
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