Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLRLFYFSAIIASVILNFVGIIMNLFITVVNCKTWVKSHRISSSDRILFSLGITRFLMLGLFLVNTIYFVSSNTERSVY-LSAFFVLCFMFLDSSSVWFVTLLNILYCVKITNFQHSVFLLLKRNISPKIPRLLLACVLISAFTTCLY-ITLSQASPFPELVTTRNNTSF---NISEG---IL-SLVVSLVLSSSLQFIINVTSASLLIHSLRRHIQKMQKNATGFWNPQTEAHVGAMKLMVYFLILYIPYSVATLVQYLPFYA---------GMDMGTKSICLIFATLYSPGHSVLIIITHPKLKTTAKKILCFKK |
2LNL Chain:A ((40-323)) | ------YVVIIAYALVFLLSLLGNSLVMLVILYSR---VGRSVTDVYLLNLALADLLFALTLPIWAASKV-NG-WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATR---TLTQK--RHLVKFVCLGCWGLSMNLSLPFFLFRQA-Y----HP-NNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMG----------QKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168272 for 1878 contacts (-89.6/contact) +
2D Compatibility (PS) -26337 + (NN) 511 + (LL) 2252
1D Compatibility (HY) -17200 + (ID) 1650
Total energy: -210696.0 ( -112.19 by residue)
QMean score : 0.143
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