Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVADLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCML-----WFFLLDLN-ISTYKDAIVISCGYKISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENWFLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSVALNYSVIKESDHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS |
| 4AMJ Chain:A ((9-300)) | ----------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP--GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY-------------REAKEQ------------SRVMLMREHKAL-----------KTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLA-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -255744 for 2018 contacts (-126.7/contact) +
2D Compatibility (PS) -27291 + (NN) 1604 + (LL) 8088
1D Compatibility (HY) -27600 + (ID) 4100
Total energy: -305043.0 ( -151.16 by residue)
QMean score : 0.254
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