Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICSTDGYCFTMIEEDDSGLPVVTSGCLGLEGSDFQCRDTPIPHQRRSIECCTERNECNKDLHPTLPPLKNRDFVDGPIHHRALLISVTVCSLLLVLIILFCYFRYKRQETRPRYSIGLEQDETYIPPGESLRDLIEQSQSSGSGSGLPLLVQRTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQDIKL |
3GXL Chain:A ((1-298)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IARTIVLQESIGKGRFGEVWRGKW---EVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTID-----RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI---HEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR--SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GXL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -148873 for 2349 contacts (-63.4/contact) +
2D Compatibility (PS) -30670 + (NN) -14545 + (LL) 10172
1D Compatibility (HY) -32000 + (ID) 9550
Total energy: -225466.0 ( -95.98 by residue)
QMean score : 0.492
|
|
|