Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGGGGGECVPQLNRLLACRAYAVPGAGDPSAECCSALSSISQ----------GCACSAI----------SIMNSLPSRCHLSQINCSA
1AFH Chain:A ((3-78))
------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38330 for 377 contacts (-101.7/contact) +
2D Compatibility (PS) -5628 + (NN) -1806 + (LL) -324
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -49388.0 ( -131.00 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: