Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC
2RKN Chain:A ((5-77))
-CGMSQDELNECKPAVSKENP--TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26090 for 497 contacts (-52.5/contact) +
2D Compatibility (PS) -7815 + (NN) -8692 + (LL) 172
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: -50875.0 ( -102.36 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: