Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGPAAGGAAVADPAGCQDDVVALNEACYKYVQK-----GAPTVPPSQECCDAVKSVDVPCVCSYLGS------------PGVRDNISMEKV--FYVSQQCGVSIPGNCGGSKV------------
1HSS Chain:A ((5-124))
--MCYPGQAFQVPAL---------PACRPLLRLQCNGSQVP-EAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITA--VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47572 for 489 contacts (-97.3/contact) +
2D Compatibility (PS) -8510 + (NN) -3806 + (LL) 764
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -62424.0 ( -127.66 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: