Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQ----VSSSLAPCIPYVRG--------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASV--------PGVNPNNAAAL------PGKCGVSIPYKIS--ASTNCATVK-----
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVP-EAVLRDCCQQLAHI--------SEWCRCGALYSMLDS-MYKEHGAFPRCRREVVKLTAASITA--VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42891 for 469 contacts (-91.5/contact) +
2D Compatibility (PS) -7884 + (NN) 2246 + (LL) 280
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -55149.0 ( -117.59 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: