Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAQCKEERRLGLNACKPVVYGR---PPSPQCCQRIRVTHIECVCPVVTPK-LA-ALIDVNRAIRVIEGCGRRVPRHFKCGSKLSPPPIHMRFLQADL
2RKN Chain:A ((2-77))
---IDLCGMSQDEL-NECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP--TC------------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36157 for 480 contacts (-75.3/contact) +
2D Compatibility (PS) -7056 + (NN) -512 + (LL) 1148
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -45877.0 ( -95.58 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: