Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------QSICNVSISG---LTSCSPAVTPPNPAPPT-----------SACCSALSHADLRCLCSYKNSTLLPSLGID-----QKLPLKLPEKCRLPHRAPC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ-PCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30680 for 478 contacts (-64.2/contact) +
2D Compatibility (PS) -7603 + (NN) -4493 + (LL) 144
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -48732.0 ( -101.95 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: