Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAGGCASQL---GNLNVCAPYVVPG-----AVNT-----NPSQECCAALSGVNHDCMCNTLR-----------------VASQLPSSCNLAALNCGN
1S6D Chain:A ((9-102))
--SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQ-
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44046 for 401 contacts (-109.8/contact) +
2D Compatibility (PS) -6553 + (NN) 986 + (LL) 184
1D Compatibility (HY) -7600 + (ID) 1100
Total energy: -58129.0 ( -144.96 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: