Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSADCAATA---ESLSPCASAVGNN-----P--QD-----PTPECCAVLQTANVDCICALVQ-----------------STMQLPSECGLETPQCPSD
1S6D Chain:A ((9-102))
--SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQ--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30728 for 390 contacts (-78.8/contact) +
2D Compatibility (PS) -6497 + (NN) -2661 + (LL) -12
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -45098.0 ( -115.64 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: