Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QECGNDLSNVQVCAAMVLP-------GSGR-----PNSECCAALQSTNRDCLCNALR-----------------AATSLPSLCNLPPVDCGINT
1S6D Chain:A ((19-102))
-------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQ---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31459 for 334 contacts (-94.2/contact) +
2D Compatibility (PS) -5948 + (NN) -5023 + (LL) 304
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -48126.0 ( -144.09 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: