Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDCTTVTGLLSTCSAFITYGSPDPYPGSPC--CDAVMNLNLIADSTDNRKSVCGCLMGLITTYNPNSTAIATLPGFCGVALGFTIDPNTDCNFVPLF
1EXT Chain:A ((62-105))
----------------------------SCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCF-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EXT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13578 for 206 contacts (-65.9/contact) +
2D Compatibility (PS) -4675 + (NN) -2201 + (LL) 1328
1D Compatibility (HY) -800 + (ID) 550
Total energy: -20476.0 ( -99.40 by residue)
QMean score : 0.149
(partial model without unconserved sides chains):
PDB file :
Tito_1EXT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EXT-query.scw
PDB file :
Tito_Scwrl_1EXT.pdb
: