Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QINTPCSPSMLSTFTPCINFLRNSTANGTSPTADCCKSLQTLTSGGRDCLCLIVTGSVPFQIPINRTLAISLPRACNMPGVPVQCKV
2RKN Chain:A ((5-77))
------CGMSQDELNECKPAVSKENP--TSPSQPCCTALQHA---DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-TC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44583 for 497 contacts (-89.7/contact) +
2D Compatibility (PS) -7627 + (NN) -3928 + (LL) 260
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -59978.0 ( -120.68 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: