Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------LTCPEVSKALVPCVTYLATGSSFVHCCTQIRLLNSKANTTSDRQGVCRCLTSLAAQFQRRHRL-NFNLVKQLPGKCNVNIR-YNITTQNPNCSQVK---------------------------------------
2IJQ Chain:A ((14-158))
GNPSGWRTDGQWEHETLRRAVVHGVRLYNSGE-FHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRTTVTNALSDPSALHGWQIRLDGEYPTCRPEDIEFAESLE
General information:
TITO was launched using:
RESULT:
Template:
2IJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62207 for 700 contacts (-88.9/contact) +
2D Compatibility (PS) -9477 + (NN) -1106 + (LL) -28
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -75718.0 ( -108.17 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_2IJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IJQ-query.scw
PDB file :
Tito_Scwrl_2IJQ.pdb
: