Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---AGECGRSSPDREAWKLAPCAMAAQDS--NAQVSDSCCQQVKKMGQNPRCLCAVMLSNTAKSSGVKPEIAVTIPKRCNIPDRPVGYKCGDYTLP--------------------------
1BM9 Chain:A ((3-122))
EEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVK--KEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF
General information:
TITO was launched using:
RESULT:
Template:
1BM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4623 for 501 contacts (9.2/contact) +
2D Compatibility (PS) -9505 + (NN) -4243 + (LL) 64
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -12311.0 ( -24.57 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1BM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BM9-query.scw
PDB file :
Tito_Scwrl_1BM9.pdb
: