Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATAQCRSLTEYSPCLDAVTTGA-EPTDQCCETLAGVMSMDDG-----LACLCDALTSDAASSL-GIRTSDAVQLPSKCQAKTGLTYTHGYNCKGATVP
1AFH Chain:A ((6-91))
-----QVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC---LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33381 for 623 contacts (-53.6/contact) +
2D Compatibility (PS) -8464 + (NN) -4531 + (LL) 1008
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -49468.0 ( -79.40 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: