Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPDQQPPCNTFMSVLSCQSATMSESTMPSPACCAALRKF-HDADCLCQVLLSAR--SAAAIANVPFNLKAALEIPMKCA-LRTVS-APPGYSCGGMVVPRSPPPTST----
1VM0 Chain:A ((19-116))
---------------KKNRIQVSNTKKPLFFYVNLAKRYMQQYN---DVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKPVQKAKIEITLVKSEKFDELMAAA
General information:
TITO was launched using:
RESULT:
Template:
1VM0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40965 for 545 contacts (-75.2/contact) +
2D Compatibility (PS) -8964 + (NN) -5044 + (LL) 664
1D Compatibility (HY) 400 + (ID) 700
Total energy: -54609.0 ( -100.20 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1VM0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM0-query.scw
PDB file :
Tito_Scwrl_1VM0.pdb
: