Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGSICRMTQDGLTACKPSVSGQSPLPPSPACCAAISKADLPCLCSFKNSALLPYLGIDPNMATQLPAKCNIVTSTHC
2RKN Chain:A ((3-77))
--DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42817 for 520 contacts (-82.3/contact) +
2D Compatibility (PS) -7671 + (NN) -3703 + (LL) -52
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -63893.0 ( -122.87 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: