Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------QPVCPLNRSDLGICVNVLGLISLTTSNVARCCSILA-GLNNTPLVSVCACEAVRL-NILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL------------
3K9I Chain:A ((54-163))
AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLDETWK
General information:
TITO was launched using:
RESULT:
Template:
3K9I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45582 for 554 contacts (-82.3/contact) +
2D Compatibility (PS) -8609 + (NN) 392 + (LL) 368
1D Compatibility (HY) 4000 + (ID) 750
Total energy: -50181.0 ( -90.58 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_3K9I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9I-query.scw
PDB file :
Tito_Scwrl_3K9I.pdb
: