Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWFYKLPSTNILDTQLTDVTTAPVVKLNILIITSNSTVVPVDVELGNLLCLQVMQARNISDGIMWGYTGAVILHVI
1YIQ Chain:A ((65-100))
--------------------TPIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW
General information:
TITO was launched using:
RESULT:
Template:
1YIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25645 for 183 contacts (-140.1/contact) +
2D Compatibility (PS) -4198 + (NN) -164 + (LL) 1504
1D Compatibility (HY) -800 + (ID) 450
Total energy: -29753.0 ( -162.58 by residue)
QMean score : -0.010
(partial model without unconserved sides chains):
PDB file :
Tito_1YIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIQ-query.scw
PDB file :
Tito_Scwrl_1YIQ.pdb
: