Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MISSQIGSGIFMLPISLA-PYGTYSLISWAVSGLGAILLALVFALLCAKFPETGGPHVYVKHAFGPTA-AFFVGWTYWASSWVSSTAVIVASIGYLAPLFHNNIQNIRLFL-EIALILAIMLINLRGITTVGHVELLLMTVKITVLFAVPIAALLLFDRNNFVVSEEISNLTISQAFARSTLLTLWCFIGLEIVTASAGSVENPSKTIPRAIVFGTVFVAIIYFINSLAIMGLINGNHLA-NSKAPYADVIKIILPGNWYLIISIVAFIVSVSSLNAWFLADGQVALGLAKDKLMPQFFAKRNKYGAPFCGIIINTLGILALLVLISSKNFAKQVTSIIDVSVVSFLFVYLTCCLAFLKVIIQEKN--YYKFLIGGMAVLFCCWIIYETPM---NTLLIASLFPLSGTPTYLLWYRKPTK |
| 3GIA Chain:A ((18-423)) | -VGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAP---SAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKST-EGLYITSALGVLFALLF-------NMEGVASITSAVFMVIY-LFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GIA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -450975 for 3588 contacts (-125.7/contact) +
2D Compatibility (PS) -40191 + (NN) -8367 + (LL) 852
1D Compatibility (HY) -35600 + (ID) 4350
Total energy: -538631.0 ( -150.12 by residue)
QMean score : 0.388
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