Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQYTFRIDNKDPLYKKLIKLPTAYYRLKHDGNKHNIHSNNNVILEIGNNTNGVKLRWENDKIVLHKGSSALY
2RAQ Chain:A ((36-62))
--------------------------------------GVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE
General information:
TITO was launched using:
RESULT:
Template:
2RAQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3182 for 94 contacts (33.9/contact) +
2D Compatibility (PS) -2636 + (NN) 3344 + (LL) 2252
1D Compatibility (HY) -2400 + (ID) 250
Total energy: 3492.0 ( 37.15 by residue)
QMean score : -0.034
(partial model without unconserved sides chains):
PDB file :
Tito_2RAQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RAQ-query.scw
PDB file :
Tito_Scwrl_2RAQ.pdb
: